18 providers
Life sciences data for AI agents
Look up proteins, genes and expression data, 3D structures and bioactive compounds. Search clinical trials, regulatory documents and the biomedical literature.
Life sciences providers 18
Every one callable through the same Firecrawl API key.
Research Indexfirecrawl.devFind scientific papers, inspect metadata, read relevant passages and follow citation relationships.AlphaFold Protein Structure Databasealphafold.ebi.ac.ukAlphaFold DB, EMBL-EBI and Google DeepMind's database of over 260 million predicted protein structures, through its keyless API at alphafold.ebi.ac.uk: the predicted structure of a protein with its pLDDT confidence, the residue ranges that are confident and those likely disordered, and links to the model, PAE and confidence files; predicted complexes containing a protein with their partners and interface scores (ipTM, ipSAE, pDockQ); and AlphaMissense pathogenicity predictions for every possible missense substitution in a human protein. Takes UniProt accessions, entry names, AlphaFold model IDs, entry URLs or gene symbols. Data is CC BY 4.0: every result carries its licence, citations and entry page.
ClinicalTrials.govclinicaltrials.govClinicalTrials.gov study registry via the public v2 REST API: search studies by condition, intervention, sponsor, location, status or Essie expression with page-token pagination; fetch one study record by NCT number; batch-resolve the raw ACTUAL/ESTIMATED start, primary-completion and completion dates for known NCT numbers; autocomplete conditions, interventions, sponsors and facilities; and read registry-wide field value statistics.
ChEMBLebi.ac.ukChEMBL, EMBL-EBI's open database of bioactive drug-like molecules (www.ebi.ac.uk/chembl), through its keyless JSON web services: molecule search by name or synonym and molecule records (structure, properties, max phase, synonyms, mechanisms of action), drug indications with EFO/MeSH terms and phases, drug targets with UniProt accessions, and bioactivity measurements (IC50, Ki, Kd, EC50, pChEMBL) by molecule and/or target. Data CC BY-SA 3.0 (attribution, share-alike); every output carries the licence and ChEMBL release.
European Medicines Agencyema.europa.euEU centrally authorised medicines (EPAR medicine pages) and EMA-assessed medicine supply shortages from EMA's published JSON data files, with EMA attribution on every result.
Europe PMCeuropepmc.orgEurope PMC (europepmc.org), EMBL-EBI's open life-science literature database, through its public REST and Annotations APIs: search PubMed abstracts, open-access full text and preprints with Europe PMC query syntax, section-level and accession filters; read article records with abstracts, licences, grants, retraction status and preprint-to-publication links; list text-mined genes, diseases, chemicals, organisms and accessions grounded to database IDs; and read the full text of open-access articles and preprints whose licence allows commercial reuse (CC0, CC BY, CC BY-SA, CC BY-ND). Every result carries attribution to Europe PMC and each article's own licence.
FDAfda.govUS FDA drug, food and device enforcement recalls, Drugs@FDA applications and approval documents (letters, labels, reviews), Orange Book products with therapeutic equivalence codes, patents and exclusivities, structured labeling, device 510(k) decisions, FAERS drug adverse-event reports, the NDC directory, drug shortages, and warning letters, via openFDA and fda.gov.
NCBI Genencbi.nlm.nih.govNCBI Gene, the U.S. National Center for Biotechnology Information's database of genes across organisms: search genes by symbol, name or Entrez query; read one gene's official symbol and aliases, NCBI summary with who provided it, chromosome and genomic location, RefSeq and MANE Select transcripts, GeneRIF publications and UniProt, Ensembl, HGNC and OMIM cross-references; and list its orthologs in other species. Uses the NCBI Datasets v2 API and E-utilities anonymously. NCBI places no restrictions on the data; every output carries an attribution line and gene page URLs.
HGNC (HUGO Gene Nomenclature Committee)genenames.orgHGNC, the authority for human gene names, through the genenames.org REST API: resolve any gene symbol, alias, previous symbol or ID (HGNC, NCBI Gene, Ensembl, UniProt, RefSeq, MGI, RGD) to the current approved symbol, with ambiguous aliases listed rather than guessed; check up to 50 genes at once; and search genes by name, symbol pattern, cytoband or locus type. Records carry the approved name, aliases, previous symbols, locus type, location, gene groups and cross-references that join NCBI Gene, Ensembl, UniProt, OMIM and PubMed. HGNC data is CC0.
Health Canada Drug Product Databasehealth-products.canada.caHealth Canada's Drug Product Database (DPD), the register of drugs authorized for sale in Canada: about 58,000 human, veterinary, disinfectant and radiopharmaceutical products, approved, marketed, dormant or cancelled. Search by brand name, active ingredient, DIN, ATC code, AIG number or company, and read one product by DIN or drug code: active ingredients with strengths, dosage forms, routes, schedules, WHO ATC class, current status with its date and the original market date, the DIN owner with address, and the product monograph link. Data is under the Open Government Licence - Canada 2.0; every result carries its attribution statement.
ISRCTNisrctn.comISRCTN, the UK's primary clinical study registry and a WHO primary registry (run by BioMed Central, part of Springer Nature), through its public XML API: search about 29,000 interventional and observational studies by condition, intervention, sponsor, funder, title, recruitment country, phase, registration date or computed recruitment status, and read one full record by ISRCTN, URL or a linked NCT, EudraCT, CTIS, IRAS or CPMS number, with eligibility, outcomes, centres, sponsors, funders, secondary identifiers and linked publications (PMIDs, DOIs). Records are CC BY 4.0: every result carries its licence, the study DOI and a citation.
Open Targets Platformplatform.opentargets.orgDrug-target evidence from the Open Targets Platform (EMBL-EBI, Wellcome Sanger Institute and partners; data CC0): target profiles with tractability, safety liabilities and cross-references; diseases and phenotypes across EFO, MONDO, HP and Orphanet with synonyms and vocabulary mappings; target-disease association scores broken down by evidence type and datasource; the evidence records behind them (GWAS, rare variants, somatic drivers, clinical precedence, literature); and known drugs and clinical candidates with mechanisms, clinical stage and trial or regulatory references. Targets resolve from symbols, synonyms and UniProt accessions, diseases from names and IDs, including retired EFO IDs. Uses the keyless Open Targets GraphQL API.
Human Protein Atlasproteinatlas.orgThe Human Protein Atlas (KTH, Uppsala University and SciLifeLab, Sweden), CC BY 4.0: for every human protein-coding gene, where the protein sits in the cell from antibody immunofluorescence, with a reliability grade (Enhanced, Supported, Approved, Uncertain) and GO ID per location, the evidence behind Enhanced grades and single-cell variation; RNA tissue and single cell type specificity with the tissues and cells that express it most; protein evidence, protein classes and secretome annotation; and the antibodies HPA used, with providers, product names, clonality and per-application validation. Search genes by location and reliability, by tissue or cell type enrichment, or by free text and HPA search syntax. Uses HPA's keyless search API and gene pages; every result carries the release, licence and attribution.
PubMed and PMCpubmed.ncbi.nlm.nih.govBiomedical literature from PubMed and PubMed Central (NIH National Library of Medicine): search with PubMed query syntax, document summaries, full article records with abstracts and MeSH indexing, PMID/PMCID/DOI resolution, similar and citing articles, and open-access full text. Uses NCBI's anonymous programmatic services (E-utilities, PMC ID Converter, BioC) only; the PubMed and PMC websites themselves sit behind a proof-of-work challenge and are not scraped.
RCSB Protein Data Bankrcsb.orgExperimentally determined 3D structures of proteins, nucleic acids and their complexes from the RCSB Protein Data Bank (wwPDB archive, CC0): search by text, organism, experimental method, resolution, release date, UniProt accession or bound ligand; full entry records with polymer entities, organisms, UniProt mappings, ligands, glycans, primary citation and coordinate download links; and Chemical Component Dictionary records for ligands with identifiers and cross-references (ChEMBL, DrugBank, PubChem, ChEBI). Uses the keyless RCSB Search and Data APIs.
NIH RePORTERreporter.nih.govNIH RePORTER research funding database via the public, keyless api.reporter.nih.gov v2 API: search NIH and other HHS-funded research projects by text, principal investigator, organization, state, fiscal year, agency and activity code; read one project with abstract, investigators, program officers, costs and study section; and list the PubMed IDs of publications linked to a project.
UniProtuniprot.orgUniProtKB, the UniProt Consortium's protein knowledgebase (EMBL-EBI, SIB and PIR), through its public REST API at rest.uniprot.org: search entries by text, gene, organism and Swiss-Prot review status; read one entry's protein and gene names with synonyms, organism, curated function, subcellular location with evidence codes, GO terms, disease associations, sequence length and PDB, AlphaFold, ChEMBL, Ensembl, NCBI Gene and HGNC cross-references; and map gene symbols or Ensembl, NCBI Gene, PDB and ChEMBL IDs to accessions. Data is CC BY 4.0: every result carries its license, attribution and entry URL.