Europe PMC
Europe PMC (europepmc.org), EMBL-EBI's open life-science literature database, through its public REST and Annotations APIs: search PubMed abstracts, open-access full text and preprints with Europe PMC query syntax, section-level and accession filters; read article records with abstracts, licences, grants, retraction status and preprint-to-publication links; list text-mined genes, diseases, chemicals, organisms and accessions grounded to database IDs; and read the full text of open-access articles and preprints whose licence allows commercial reuse (CC0, CC BY, CC BY-SA, CC BY-ND). Every result carries attribution to Europe PMC and each article's own licence.
Try Europe PMC now.
Choose an example or ask your own question.
const result = await firecrawl.scrape({
alexandria: {
provider: "europepmc-org",
capability: "publications/annotations",
options: {
id: "PMC3257301",
limit: 5,
types: [
"genes_proteins",
"diseases",
"chemicals",
],
},
},
});This is a sample shape. Press Run to see live data from Europe PMC.
{
"article": {
"doi": "10.1371/journal.ppat.1002485",
"europepmc_url": "https://europepmc.org/article/MED/22253597",
"full_text": "available",
"id": "MED:22253597",
"license": {
"commercial_reuse": true,
"name": "CC BY"
},
"pmcid": "PMC3257301",
"pmid": "22253597",
"source": "pubmed",
"title": "The bZIP transcription factor Rca1p is a central regulator of a novel CO₂ sensing pathway in yeast."
},
"attribution": {
"terms_url": "https://europepmc.org/AnnotationsSubmission",
"text": "Text-mined annotations from the Europe PMC annotations platform (Europe PMC), published by Europe PMC as public domain. Cite: Europe PMC in 2023, Nucleic Acids Research 52(D1):D1668-D1676 (2024), https://doi.org/10.1093/nar/gkad1085"
},
"entities": [
{
"database": "uniprot",
"example": "YPD of strains RCA1/ rca1 Δ+",
"identifier": "P40341",
"matched_text": [
"RCA1"
],
"mentions": 53,
"name": "YM9582.14C",
"sections": [
"methods",
"results",
"discussion",
"supplementary"
],
"type": "genes_proteins",
"uri": "https://www.uniprot.org/uniprotkb/P40341/entry"
},
{
"database": "uniprot",
"example": "and carbonic anhydrase (CA).",
"identifier": "A0A0B7P3V8",
"matched_text": [
"CA"
],
"mentions": 46,
"name": "YPL060C-A",
"sections": [
"abstract",
"introduction",
"results",
"discussion"
],
"type": "genes_proteins",
"uri": "https://www.uniprot.org/uniprotkb/A0A0B7P3V8/entry"
},
{
"database": "uniprot",
"example": "diluted as follows: anti-NCE103 at 1∶500, anti-LacZ",
"identifier": "P53615",
"matched_text": [
"NCE103"
],
"mentions": 20,
"name": "N2695",
"sections": [
"methods",
"results",
"discussion",
"supplementary"
],
"type": "genes_proteins",
"uri": "https://www.uniprot.org/uniprotkb/P53615/entry"
},
{
"database": "uniprot",
"example": "Δ+ RCA1 − HA 3 (tagged) were",
"identifier": "P69209",
"matched_text": [
"HA"
],
"mentions": 18,
"name": "Head activator",
"sections": [
"methods",
"results",
"supplementary"
],
"type": "genes_proteins",
"uri": "https://www.uniprot.org/uniprotkb/P69209/entry"
},
{
"database": "uniprot",
"example": "The bZIP transcription factor factor Rca1p is",
"identifier": "Q707Y7",
"matched_text": [
"transcription factor",
"transcriptional factor"
],
"mentions": 17,
"name": "MATalpha1 transcription factor",
"sections": [
"title",
"abstract",
"introduction",
"results",
"discussion"
],
"type": "genes_proteins",
"uri": "https://www.uniprot.org/uniprotkb/Q707Y7/entry"
}
],
"limit": 5,
"observed_at_ms": 1792530591400,
"providers": [
"Europe PMC"
],
"relations": [],
"sections": null,
"text_withheld": false,
"total_entities": 75,
"total_relations": 0,
"types": [
"genes_proteins",
"diseases",
"chemicals"
]
}